Journal Of Biochemical Technology
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2012 Volume 3 Issue 4

Homology modelling and molecular dynamics study of plant defensin DM-AMP1

Abstract
Defensin in plants are the most important types of antimicrobial protein that provides the natural immunity against the pathogens. In the present work a stable protein model of plant Defensin DM-AMP1 has been proposed, whose three dimensional structure is not known. The method comprises the homology based modelling of the protein by using MODELLER program and validation of the model by various tools. Molecular dynamics simulation of the model protein was performed in water. The stability of the model was realised by computing root mean square deviation (RMSD) fluctuation of Carbon alpha back bone and potential energy value.
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JOURNAL OF BIOCHEMICAL TECHNOLOGY
JOURNAL OF BIOCHEMICAL TECHNOLOGY
Journal of Biochemical Technology is a double-blind peer reviewed International Journal published by the Deniz Publication on behalf of the Biochemical Technology Society, a Registered Charity Organization from India
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ABOUT US
Welcome to the Journal of Biochemical Technology, a prestigious international double-blind peer-reviewed journal dedicated to advancing excellence in biochemical, biotechnological, and bioinformatics research with direct applications in biology and medicine.
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AIM AND SCOPE
The Journal of Biochemical Technology is dedicated to publishing innovative research in the fields of biochemistry, biotechnology, and bioinformatics with direct applications in biology and medicine.

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This journal provides immediate open access to its content on the principle that making research freely available to the public supports a greater global exchange of knowledge. Keywords include, Biochemical Research: Endo/exocytosis, Trafficking, Membrane Biology, Cell Migration, Cell-Matrix Organelle Biogenesis, Cytoskeleton Proteolysis, Cell Death, Cell Cycle, Cancer, Cell Growth/Death, Differentiation, Drug Targets, Gene Therapy, Models of Disease, Proteomics, Stem Cells, Bioenergetics, Mitochondria, Free Radicals, Redox Signaling, Ion Transport/Channels, Oxidative